Engineering Supercomputing Platforms for Biomolecular Applications
In 2024 I worked on a project for ExCALIBUR to develop benchmarks and benchmarking tools for current and next-generation HPC systems, and expand our benchmarking focus to include more software and more computational biology methods. You can find more information on the HecBIoSim website, or in the report I wrote:
- Read my full report – including benchmarking results and qualitative recommendations
- See only the results
- Download the raw data
- Download the benchmarking utilities I wrote, which can automatically generate and run benchmarks on HPC, as well as providing a standardised output format and scriptable plotting tools
- See the HPC time\energy usage calculator on the HECBioSim website
- Watch the presentation (coming soon)
Last updated August 21, 2025.